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  1. 1.
    escape::escape.gene.sets
    Built-In Gene Sets for escape
  2. 2.
    Ibex::ibex_example
    A SingleCellExperiment object with 200 randomly-sampled B cells with BCR sequences from the 10x Genomics 2k_BEAM-Ab_Mouse_HEL_5pv2 dataset.
    SingleCellExperiment
  3. 3.
    Ibex::ibex_vdj
    Full filtered_annotated_contig.csv from the 10x 2k_BEAM-Ab_Mouse_HEL_5pv2
  4. 4.
    immApex::immapex_blosum.pam.matrices
    List of amino acid substitution matrices
  5. 5.
    immApex::immapex_example.data
    Example contig data for Apex
  6. 6.
    immApex::immapex_gene.list
    A list of IMGT gene names by genes, loci, and species
  7. 7.
    immGLIPH::gliph_input_data
    Example TCR input data
  8. 8.
    immGLIPH::gliph_sce
    Example SingleCellExperiment with TCR clonal information
    SingleCellExperiment
  9. 9.
    immGLIPH::gTRB
    Germline TCR-beta CDR3 fragments
  10. 10.
    immGLIPH::ref_cluster_sizes
    Cluster size probabilities in naive reference repertoire
  11. 11.
    immLynx::immLynx_example
    Example Single-Cell RNA-seq Data with TCR Information
    SingleCellExperiment
  12. 12.
    scRepertoire::contig_list
    A List of Eight Single-cell TCR Sequencing Runs.
  13. 13.
    scRepertoire::scRep_example
    A Seurat Object of 500 Single T cells,
    Seurat